SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence-Reference-Cited by-同舟云学术

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Published:2016-07-25 Issue: Volume: Page:gkw655
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:Nucleic Acids Res

Author:

Lopez-Maestre Hélène,Brinza Lilia,Marchet Camille,Kielbassa Janice,Bastien Sylvère,Boutigny Mathilde,Monnin David,Filali Adil El,Carareto Claudia Marcia,Vieira Cristina,Picard Franck,Kremer Natacha,Vavre Fabrice,Sagot Marie-France,Lacroix Vincent

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/44/19/e148/18786172/gkw655.pdf

Reference42 articles.

1. De novo assembly and genotyping of variants using colored de Bruijn graphs

2. Reference-free detection of isolated SNPs

3. Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs

4. Reliable Identification of Genomic Variants from RNA-Seq Data

5. Comparative population genomics in animals uncovers the determinants of genetic diversity

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