Neutralizing Immunity Induced Against the Omicron BA.1 and BA.2 Variants in Vaccine Breakthrough Infections

Author:

Brazer Noah1,Morris Mary Kate2,Servellita Venice1,Anglin Khamal3,Saldhi Prachi1,Garcia-Knight Miguel4,Bethancourt Sutana2,Sotomayor-Gonzalez Alicia1,Wang Baolin1,Foresythe Abiodun1,Nguyen Jenny1,Gliwa Amelia S1,Pineda-Ramirez Jesus3,Sanchez Ruth Diaz3,Zhang Yueyuan1,Ott Melanie5678,Wadford Debra A2,Andino Raul4,Kelly J Daniel3,Hanson Carl2,Chiu Charles Y178

Affiliation:

1. Department of Laboratory Medicine, University of California , San Francisco, California , USA

2. California Department of Public Health, Viral and Rickettsial Disease Laboratory , Richmond, California , USA

3. Department of Epidemiology and Biostatistics, University of California , San Francisco, California , USA

4. Department of Microbiology and Immunology, University of California , San Francisco, California , USA

5. California Institute for Quantitative Biosciences (QB3), University of California , Berkeley, California , USA

6. Gladstone Institutes , San Francisco, California , USA

7. Innovative Genomics Institute, University of California , Berkeley, California , USA

8. Department of Medicine, University of California , San Francisco, California , USA

Abstract

Abstract Background As of early 2022, the Omicron variants are the predominant circulating lineages globally. Understanding neutralizing antibody responses against Omicron BA.1 and BA.2 after vaccine breakthrough infections will provide insights into BA.2 infectivity and susceptibility to subsequent reinfection. Methods Live virus neutralization assays were used to study immunity against Delta and Omicron BA.1 and BA.2 variants in samples from 86 individuals, 24 unvaccinated (27.9%) and 62 vaccinated (72.1%), who were infected with Delta (n = 42, 48.8%) or BA.1 (n = 44, 51.2%). Among the 62 vaccinated individuals, 39 were unboosted (62.9%), whereas 23 were boosted (37.1%). Results In unvaccinated infections, neutralizing antibodies (nAbs) against the three variants were weak or undetectable, except against Delta for Delta-infected individuals. Both Delta and BA.1 breakthrough infections resulted in strong nAb responses against ancestral wild-type and Delta lineages, but moderate nAb responses against BA.1 and BA.2, with similar titers between unboosted and boosted individuals. Antibody titers against BA.2 were generally higher than those against BA.1 in breakthrough infections. Conclusions These results underscore the decreased immunogenicity of BA.1 compared to BA.2, insufficient neutralizing immunity against BA.2 in unvaccinated individuals, and moderate to strong neutralizing immunity induced against BA.2 in Delta and BA.1 breakthrough infections.

Funder

US Centers for Disease Control and Prevention (CDC) Epidemiology and Laboratory Capacity for Infectious Diseases

Innovative Genomics Institute at UC Berkeley and UC San Francisco

James B. Pendleton Charitable Trust

US Centers for Disease Control and Prevention

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Infectious Diseases,Immunology and Allergy

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