LettuceDB: an integrated multi-omics database for cultivated lettuce

Author:

Zhou Wenhui123,Yang Tao45,Zeng Liucui26,Chen Jing4,Wang Yayu3,Guo Xing23,You Lijin4,Liu Yiqun4,Du Wensi4,Yang Fan4,Hua Cong24,Cai Jia24,van Hintum Theo7,Liu Huan3,Gu Ying23,Wei Xiaofeng45,Wei Tong23ORCID

Affiliation:

1. College of Life Sciences, University of Chinese Academy of Sciences , Beijing 100049, China

2. BGI Research , Wuhan 430074, China

3. State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research , Shenzhen 518083, China

4. China National GeneBank, BGI Research , Shenzhen 518120, China

5. Guangdong Genomics Data Center, BGl research , Shenzhen 518120, China

6. South China Agricultural University , Guangzhou 510642, China

7. Centre for Genetic Resources, the Netherlands , P.O. Box 16, Wageningen 6700 AA, The Netherlands

Abstract

Abstract Crop genomics has advanced rapidly during the past decade, which generated a great abundance of omics data from multi-omics studies. How to utilize the accumulating data becomes a critical and urgent demand in crop science. As an attempt to integrate multi-omics data, we developed a database, LettuceDB (https://db.cngb.org/lettuce/), aiming to assemble multidimensional data for cultivated and wild lettuce germplasm. The database includes genome, variome, phenome, microbiome and spatial transcriptome. By integrating user-friendly bioinformatics tools, LettuceDB will serve as a one-stop platform for lettuce research and breeding in the future. Database URL: https://db.cngb.org/lettuce/

Publisher

Oxford University Press (OUP)

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