Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists-Reference-Cited by-同舟云学术

Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists

Published:2013-01-01 Issue: Volume:2013 Page:
ISSN:1758-0463
Container-title:Database
language:en
Short-container-title:

Author:

Wiley Laura K.¹,Sivley R. Michael¹,Bush William S.¹

Affiliation:

1. Department of Biomedical Informatics, Center for Human Genetics Research, Vanderbilt University, 2215 Garland Ave, Nashville, TN 37232 USA and 2Department of Electrical Engineering and Computer Science, Center for Human Genetics Research, Vanderbilt University, 2215 Garland Ave, Nashville, TN 37203 USA

Publisher

Oxford University Press (OUP)

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Information Systems

Link

http://academic.oup.com/database/article-pdf/doi/10.1093/database/bat056/11197791/bat056.pdf

Reference6 articles.

1. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data;Wang;Nucleic Acids Res.,2010

2. Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases;Alekseyenko;Bioinformatics,2007

3. Diverse splicing patterns of exonized Alu elements in human tissues;Lin;PLoS Genet.,2008

4. Predicting functional alternative splicing by measuring RNA selection pressure from multigenome alignments;Lu;PLoS Comput. Biol.,2009

5. PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci;Salmon-Divon;BMC Bioinformatics,2010

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