The UCSC Genome Browser database: 2024 update-Reference-Cited by-同舟云学术

The UCSC Genome Browser database: 2024 update

Published:2023-11-11 Issue:D1 Volume:52 Page:D1082-D1088
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Raney Brian J¹^ORCID,Barber Galt P¹,Benet-Pagès Anna²³,Casper Jonathan¹,Clawson Hiram¹^ORCID,Cline Melissa S¹,Diekhans Mark¹^ORCID,Fischer Clayton¹,Navarro Gonzalez Jairo¹^ORCID,Hickey Glenn¹,Hinrichs Angie S¹^ORCID,Kuhn Robert M⁴,Lee Brian T¹^ORCID,Lee Christopher M¹^ORCID,Le Mercier Phillipe⁵^ORCID,Miga Karen H¹,Nassar Luis R¹^ORCID,Nejad Parisa¹,Paten Benedict¹^ORCID,Perez Gerardo¹,Schmelter Daniel¹,Speir Matthew L¹^ORCID,Wick Brittney D¹,Zweig Ann S¹,Haussler David¹,Kent W James¹,Haeussler Maximilian¹

Affiliation:

1. Genomics Institute, University of California Santa Cruz , Santa Cruz , CA 95064 , USA

2. Institute of Neurogenomics, Helmholtz Zentrum München GmbH - German Research Center for Environmental Health , 85764 Neuherberg , Germany

3. Medical Genetics Center (Medizinisch Genetisches Zentrum) , Munich 80335 , Germany

4. Robert Kuhn Consulting , Aptos, CA 95003, USA

5. Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel Servet , 1211 Geneva 4 , Switzerland

Abstract

Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a web-based genomic visualization and analysis tool that serves data to over 7,000 distinct users per day worldwide. It provides annotation data on thousands of genome assemblies, ranging from human to SARS-CoV2. This year, we have introduced new data from the Human Pangenome Reference Consortium and on viral genomes including SARS-CoV2. We have added 1,200 new genomes to our GenArk genome system, increasing the overall diversity of our genomic representation. We have added support for nine new user-contributed track hubs to our public hub system. Additionally, we have released 29 new tracks on the human genome and 11 new tracks on the mouse genome. Collectively, these new features expand both the breadth and depth of the genomic knowledge that we share publicly with users worldwide.

Funder

National Human Genome Research Institute

National Institute of Allergy and Infectious Diseases

Silicon Valley Community Foundation

National Institutes of Mental Health

California Department of Public Health

Centers for Disease Control

National Institute of Mental Health

State Secretariat for Education, Research and Innovation SERI

Publisher

Oxford University Press (OUP)

Subject