The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more-Reference-Cited by-同舟云学术

The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more

Published:2023-10-30 Issue:D1 Volume:52 Page:D586-D589
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Blin Kai¹^ORCID,Shaw Simon¹,Medema Marnix H²^ORCID,Weber Tilmann¹^ORCID

Affiliation:

1. The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , Lyngby 2800, Denmark

2. Bioinformatics Group, Wageningen University , Wageningen , 6708PB, The Netherlands

Abstract

Abstract Many microorganisms produce natural products that are frequently used in the development of medicines and crop protection agents. Genome mining has evolved into a prominent method to access this potential. antiSMASH is the most popular tool for this task. Here we present version 4 of the antiSMASH database, providing biosynthetic gene clusters detected by antiSMASH 7.1 in publicly available, dereplicated, high-quality microbial genomes via an interactive graphical user interface. In version 4, the database contains 231 534 high quality BGC regions from 592 archaeal, 35 726 bacterial and 236 fungal genomes and is available at https://antismash-db.secondarymetabolites.org/.

Funder

Novo Nordisk Foundation

Danish National Research Foundation

ERC

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

https://academic.oup.com/nar/article-pdf/52/D1/D586/55040357/gkad984.pdf

Reference26 articles.

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