Ensembl 2024
Author:
Harrison Peter W1ORCID, Amode M Ridwan1, Austine-Orimoloye Olanrewaju1, Azov Andrey G1, Barba Matthieu1, Barnes If1, Becker Arne1, Bennett Ruth1, Berry Andrew1, Bhai Jyothish1, Bhurji Simarpreet Kaur1, Boddu Sanjay1, Branco Lins Paulo R1, Brooks Lucy1, Ramaraju Shashank Budhanuru1, Campbell Lahcen I1, Martinez Manuel Carbajo1, Charkhchi Mehrnaz1, Chougule Kapeel2ORCID, Cockburn Alexander1, Davidson Claire1, De Silva Nishadi H1ORCID, Dodiya Kamalkumar1, Donaldson Sarah1, El Houdaigui Bilal1, Naboulsi Tamara El1, Fatima Reham1, Giron Carlos Garcia1ORCID, Genez Thiago1, Grigoriadis Dionysios1, Ghattaoraya Gurpreet S1, Martinez Jose Gonzalez1, Gurbich Tatiana A1ORCID, Hardy Matthew1, Hollis Zoe1, Hourlier Thibaut1ORCID, Hunt Toby1, Kay Mike1, Kaykala Vinay1, Le Tuan1, Lemos Diana1, Lodha Disha1, Marques-Coelho Diego1, Maslen Gareth1, Merino Gabriela Alejandra1, Mirabueno Louisse Paola1, Mushtaq Aleena1, Hossain Syed Nakib1, Ogeh Denye N1, Sakthivel Manoj Pandian1, Parker Anne1, Perry Malcolm1, Piližota Ivana1, Poppleton Daniel1, Prosovetskaia Irina1, Raj Shriya1ORCID, Pérez-Silva José G1, Salam Ahamed Imran Abdul1, Saraf Shradha1, Saraiva-Agostinho Nuno1, Sheppard Dan1, Sinha Swati1, Sipos Botond1, Sitnik Vasily1, Stark William1, Steed Emily1, Suner Marie-Marthe1ORCID, Surapaneni Likhitha1, Sutinen Kyösti1, Tricomi Francesca Floriana1, Urbina-Gómez David1, Veidenberg Andres1, Walsh Thomas A1, Ware Doreen34ORCID, Wass Elizabeth1, Willhoft Natalie L1, Allen Jamie1, Alvarez-Jarreta Jorge1, Chakiachvili Marc1, Flint Bethany1, Giorgetti Stefano1, Haggerty Leanne1, Ilsley Garth R1, Keatley Jon1, Loveland Jane E1ORCID, Moore Benjamin1, Mudge Jonathan M1, Naamati Guy1, Tate John1, Trevanion Stephen J1, Winterbottom Andrea1, Frankish Adam1ORCID, Hunt Sarah E1ORCID, Cunningham Fiona1, Dyer Sarah1, Finn Robert D1ORCID, Martin Fergal J1ORCID, Yates Andrew D1ORCID
Affiliation:
1. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus , Hinxton , Cambridge , Cambridgeshire CB10 1SD, UK 2. Cold Spring Harbor Laboratory , 1 Bungtown Rd, Cold Spring Harbor, NY 11724 , USA 3. Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor , NY 11724 , USA 4. USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service , Ithaca , NY 14853 , USA
Abstract
Abstract
Ensembl (https://www.ensembl.org) is a freely available genomic resource that has produced high-quality annotations, tools, and services for vertebrates and model organisms for more than two decades. In recent years, there has been a dramatic shift in the genomic landscape, with a large increase in the number and phylogenetic breadth of high-quality reference genomes, alongside major advances in the pan-genome representations of higher species. In order to support these efforts and accelerate downstream research, Ensembl continues to focus on scaling for the rapid annotation of new genome assemblies, developing new methods for comparative analysis, and expanding the depth and quality of our genome annotations. This year we have continued our expansion to support global biodiversity research, doubling the number of annotated genomes we support on our Rapid Release site to over 1700, driven by our close collaboration with biodiversity projects such as Darwin Tree of Life. We have also strengthened support for key agricultural species, including the first regulatory builds for farmed animals, and have updated key tools and resources that support the global scientific community, notably the Ensembl Variant Effect Predictor. Ensembl data, software, and tools are freely available.
Funder
Wellcome Trust National Human Genome Research Institute of the National Institutes of Health National Institute of Allergy and Infectious Diseases of the National Institutes of Health The Biotechnology and Biological Sciences Research Council UK Medical Research Council Open Targets ELIXIR European Molecular Biology Laboratory European Union's Horizon 2020 Horizon Europe programme Gordon and Betty Moore Foundation
Publisher
Oxford University Press (OUP)
Cited by
1 articles.
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