Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time
Author:
Affiliation:
1. Department of Chemistry, University of Texas , Austin, TX 78712, USA
2. School of Pharmacy, University of Nottingham , Nottingham, UK
3. Department of Physics, University of Texas , Austin, TX 78712, USA
Abstract
Funder
National Science Foundation
Collie-Welch Regents Chair
Welch Foundation
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
https://academic.oup.com/nar/article-pdf/51/19/10737/52581957/gkad755.pdf
Reference66 articles.
1. Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations;Heilman-Miller;J. Mol. Biol.,2001
2. Mg2 +–RNA interaction free energies and their relationship to the folding of RNA tertiary structures;Grilley;Proc. Natl. Acad. Sci. U.S.A.,2006
3. Charge density of divalent metal cations determines RNA stability;Koculi;J. Am. Chem. Soc.,2007
4. Cations in charge: magnesium ions in RNA folding and catalysis;Bowman;Curr. Opin. Struct. Biol.,2012
5. Understanding nucleic acid–ion interactions;Lipfert;Annu. Rev. Biochem.,2014
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1. Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences;Journal of Chemical Theory and Computation;2024-03-18
2. RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy;Nucleic Acids Research;2023-11-20
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