The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites

Author:

Senanayake Kanchana S1,Söderberg Jonas2,Põlajev Aleksei2,Malmberg Maja23,Karunanayake Eric H1,Tennekoon Kamani H1,Samarakoon Sameera R1,Bongcam-Rudloff Erik2,Niazi Adnan2ORCID

Affiliation:

1. Institute of Biochemistry, Molecular Biology and Biotechnology, University of Colombo, Sri Lanka

2. SLU Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden

3. Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Uppsala, Sweden

Abstract

Abstract Here we present the draft genome sequence of Setaria digitata, a parasitic nematode affecting cattle. Due to its similarity to Wuchereria bancrofti, the parasitic nematode that causes lymphatic filariasis in humans, S. digitata has been used as a model organism at the genomic level to find drug targets which can be used for the development of novel drugs and/or vaccines for human filariasis. Setaria digitata causes cerebrospinal nematodiasis in goats, sheep, and horses posing a serious threat to livestock in developing countries. The genome sequence of S. digitata will assist in finding candidate genes to use as drug targets in both S. digitata and W. bancrofti. The assembled draft genome is ∼90 Mb long and contains 8,974 genomic scaffolds with a G+C content of 31.73%.

Funder

Swedish Research Links

Swedish Research Council

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Reference31 articles.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J Comput Biol,2012

2. Cerebrospinal nematodiasis of cattle, sheep and goats in Iran;Bazargani;Iran J Parasitol,2008

3. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses;Capella-Gutierrez;Bioinformatics,2009

4. Histological studies on femaleSetaria digitata (von Linstow 1906), a filaria of bovine;Decruse;Proc Anim Sci,1990

5. Antigen of Setaria digitata: cross-reaction with surface antigens of Wuchereria bancrofti microfilariae and serum antibodies of W. bancrofti-infected subjects;Dissanayake;Bull World Health Organ,1980

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3