Droplet digital PCR for identifying copy number variations in patients with primary immunodeficiency disorders

Author:

Woon See-Tarn12,Mayes Julia1,Quach Alexander3,Longhurst Hilary45,Ferrante Antonio3,Ameratunga Rohan124ORCID

Affiliation:

1. Department of Virology and Immunology, LabPLUS, Auckland City Hospital, Grafton, Auckland, New Zealand

2. Department of Molecular Medicine and Pathology, Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand

3. SA Pathology at the Women’s & Children’s Hospital, Immunopathology Department, North Adelaide, South Australia, Australia

4. Department of Clinical Immunology, Auckland City Hospital, Grafton, Auckland, New Zealand

5. Department of Medicine, Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand

Abstract

Abstract Primary immunodeficiency disorders comprise a rare group of mostly monogenic disorders caused by inborn errors of immunity. The majority can be identified by either Sanger sequencing or next generation sequencing. Some disorders result from large insertions or deletions leading to copy number variations (CNVs). Sanger sequencing may not identify these mutations. Here we present droplet digital PCR as an alternative cost-effective diagnostic method to identify CNV in these genes. The data from patients with large deletions of NFKB1, SERPING1, and SH2D1A are presented.

Publisher

Oxford University Press (OUP)

Subject

Immunology,Immunology and Allergy

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