Machine learning for identification of short-term all-cause and cardiovascular deaths among patients undergoing peritoneal dialysis patients

Author:

Xu Xiao1,Xu Zhiyuan2,Ma Tiantian1,Li Shaomei3,Pei Huayi3,Zhao Jinghong4ORCID,Zhang Ying4,Xiong Zibo5,Liao Yumei5,Li Ying6,Lin Qiongzhen6,Hu Wenbo7,Li Yulin7,Zheng Zhaoxia8,Duan Liping8,Fu Gang9,Guo Shanshan9,Zhang Beiru10,Yu Rui10,Sun Fuyun11,Ma Xiaoying11,Hao Li12,Liu Guiling12,Zhao Zhanzheng13ORCID,Xiao Jing13,Shen Yulan14,Zhang Yong14,Du Xuanyi15,Ji Tianrong15,Wang Caili16,Deng Lirong16,Yue Yingli17,Chen Shanshan17,Ma Zhigang18,Li Yingping18,Zuo Li19,Zhao Huiping19,Zhang Xianchao20,Wang Xuejian20,Liu Yirong21,Gao Xinying21,Chen Xiaoli22,Li Hongyi22,Du Shutong23,Zhao Cui23,Xu Zhonggao24,Zhang Li24,Chen Hongyu25,Li Li25,Wang Lihua26,Yan Yan26,Ma Yingchun27,Wei Yuanyuan27,Zhou Jingwei28,Li Yan28,Dong Jie1,Niu Kai2,He Zhiqiang2

Affiliation:

1. Renal Division, Department of Medicine, Peking University First Hospital; Institute of Nephrology, Peking University; Key Laboratory of Renal Disease, Ministry of Health; Key Laboratory of Renal Disease, Ministry of Education ; Beijing , China

2. Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications , Beijing , China

3. Renal Division, Department of Medicine, The Second Hospital of Hebei Medical University ; Hebei , China

4. Department of Nephrology, the Key Laboratory for the Prevention and Treatment of Chronic Kidney Disease of Chongqing, Chongqing Clinical Research Center of Kidney and Urology Diseases, Xinqiao Hospital, Army Medical University (Third Military Medical University) , Chongqing , China

5. Renal Division, Department of Medicine, Peking University Shenzhen Hospital ; Guangdong , China

6. Renal Division, Department of Medicine, The Third Hospital of Hebei Medical University ; Hebei , China

7. Renal Division, Department of Medicine, People's Hospitel of Qinghai Province ; Qinghai , China

8. Renal Division, Department of Medicine, Handan Central Hospital ; Hebei , China

9. Renal Division, Department of Medicine, Peking Haidian Hospital ; Beijing , China

10. Department of Nephrology, Shengjing Hospital of China Medical University , Shenyang, Liaoning , China

11. Renal Division, Department of Medicine, Cangzhou Central Hospital ; Hebei , China

12. Renal Division, Department of Medicine, The Second Affiliated Hospital of Anhui Medical University ; Anhui , China

13. Renal Division, Department of Medicine, The First Affiliated Hospital of Zhengzhou University ; Henan , China

14. Renal Division, Department of Medicine, Beijing Miyun District hospital ; Beijing , China

15. Renal Division, Department of Medicine, The Second Affiliated Hospital of Harbin Medical University ; Heilongjiang , China

16. Renal Division, Department of Medicine, The First Affiliated Hospital of BaoTou Medical College ; Neimenggu, China

17. Renal Division, Department of Medicine, People's Hospital of Langfang ; Hebei , China

18. Renal Division, Department of Medicine, People's Hospital of Gansu ; Gansu , China

19. Renal Division, Department of Medicine, Peking University People's Hospital , Beijing , China

20. Renal Division, Department of Medicine, Pingdingshan First People's Hospital ; Henan , China

21. Renal Division, Department of Medicine, The First People's Hospital of Xining ; Qinghai , China

22. Renal Division, Department of Medicine, Taiyuan Central Hospital ; Shanxi , China

23. Renal Division, Department of Medicine, Cangzhou People's Hospital ; Hebei , China

24. Renal Division, Department of Medicine, First Hospital of Jilin University ; Jilin , China

25. Renal Division, Department of Medicine, The People's Hospital of Chuxiong Yi Autonomous Prefecture , Yunnan , China

26. Renal Division, Department of Medicine, The Second Hospital of Shanxi Medical University , Shanxi , China

27. Renal Division, Department of Medicine, China Rehabilitation Research Center, Beijing Boai Hospital , Beijing , China

28. Renal Division, Department of Medicine, Beijing Dongzhimen Hospital ; Beijing , China

Abstract

Abstract Although more and more cardiovascular risk factors have been verified in peritoneal dialysis (PD) populations in different countries and regions, it is still difficult for clinicians to accurately and individually predict death in the near future. We aimed to develop and validate machine learning-based models to predict near-term all-cause and cardiovascular death. Machine learning models were developed among 7539 PD patients, which were randomly divided into a training set and an internal test set by 5 random shuffles of 5-fold cross-validation, to predict the cardiovascular death and all-cause death in 3 months. We chose objectively-collected markers such as patient demographics, clinical characteristics, laboratory data and dialysis-related variables to inform the models and assessed the predictive performance using a range of common performance metrics, such as sensitivity, positive predictive values (PPV), the area under the receiver operating curve (AUROC) and the area under the precision recall curve (AUPRC). In the test set, the CVDformer models had a AUROC of 0.8767 (0.8129, 0.9045) and 0.9026 (0.8404, 0.9352) and AUPRC of 0.9338 (0.8134,0.9453) and 0.9073 (0.8412,0.9164) in predicting near-term all-cause death and cardiovascular death, respectively. The CVDformer models had high sensitivity and PPV for predicting all-cause and cardiovascular deaths in 3 months in our PD population. Further calibration is warranted in the future.

Publisher

Oxford University Press (OUP)

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