GenBank

Author:

Sayers Eric W1ORCID,Cavanaugh Mark1,Clark Karen1,Pruitt Kim D1,Schoch Conrad L1ORCID,Sherry Stephen T1,Karsch-Mizrachi Ilene1

Affiliation:

1. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA

Abstract

Abstract GenBank® (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains 9.9 trillion base pairs from over 2.1 billion nucleotide sequences for 478 000 formally described species. Daily data exchange with the European Nucleotide Archive and the DNA Data Bank of Japan ensures worldwide coverage. Recent updates include new resources for data from the SARS-CoV-2 virus, updates to the NCBI Submission Portal and associated submission wizards for dengue and SARS-CoV-2 viruses, new taxonomy queries for viruses and prokaryotes, and simplified submission processes for EST and GSS sequences.

Funder

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference10 articles.

1. GenBank;Sayers;Nucleic Acids Res.,2020

2. VADR: validation and annotation of virus sequence submissions to GenBank;Schaffer;BMC Bioinform.,2020

3. NCBI viral genomes resource;Brister;Nucleic Acids Res.,2015

4. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation;O’Leary;Nucleic Acids Res.,2016

5. BLAST: a more efficient report with usability improvements;Boratyn;Nucleic Acids Res.,2013

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