H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles

Author:

Belotti Edwige1,Lacoste Nicolas1,Simonet Thomas1,Papin Christophe2ORCID,Padmanabhan Kiran3,Scionti Isabella1,Gangloff Yann-Gaël1ORCID,Ramos Lorrie4,Dalkara Defne4,Hamiche Ali2ORCID,Dimitrov Stefan45,Schaeffer Laurent16ORCID

Affiliation:

1. Institut NeuroMyoGène, Université Claude Bernard Lyon 1, Université de Lyon, INSERM U1217, CNRS UMR5310, 8 avenue Rockefeller, 69008 Lyon, France

2. Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, Parc d’innovation, 1 rue Laurent Fries, 67404 Ilkirch Cedex, France

3. Institut de Génomique Fonctionnelle de Lyon, CNRS UMR 5242, École Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, 32-34 Avenue Tony Garnier, 69007 Lyon, France

4. Institute for Advanced Biosciences (IAB), Université Grenoble Alpes, CNRS UMR 5309, INSERM U1209, Site Santé - Allée des Alpes, 38700 La Tronche, France

5. Izmir Biomedicine and Genome Center, Dokuz Eylul University Health Campus, Balcova, Izmir 35330, Turkey

6. Centre de Biotechnologie Cellulaire, Hospices Civils de Lyon, Lyon, France

Abstract

Abstract While the histone variant H2A.Z is known to be required for mitosis, it is also enriched in nucleosomes surrounding the transcription start site of active promoters, implicating H2A.Z in transcription. However, evidence obtained so far mainly rely on correlational data generated in actively dividing cells. We have exploited a paradigm in which transcription is uncoupled from the cell cycle by developing an in vivo system to inactivate H2A.Z in terminally differentiated post-mitotic muscle cells. ChIP-seq, RNA-seq and ATAC-seq experiments performed on H2A.Z KO post-mitotic muscle cells show that this histone variant is neither required to maintain nor to activate transcription. Altogether, this study provides in vivo evidence that in the absence of mitosis H2A.Z is dispensable for transcription and that the enrichment of H2A.Z on active promoters is a marker but not an active driver of transcription.

Funder

Association Française contre les Myopathies

Agence Nationale pour la Recherche

La Ligue Nationale contre le Cancer

Fondation pour la Recherche Médicale

Publisher

Oxford University Press (OUP)

Subject

Genetics

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