The international glycan repository GlyTouCan version 3.0

Author:

Fujita Akihiro1,Aoki Nobuyuki P1,Shinmachi Daisuke1,Matsubara Masaaki2,Tsuchiya Shinichiro2,Shiota Masaaki1,Ono Tamiko1,Yamada Issaku2ORCID,Aoki-Kinoshita Kiyoko F13ORCID

Affiliation:

1. Graduate School of Science and Engineering, Soka University, Tokyo 192-8577, Japan

2. The Noguchi Institute, Tokyo 173-0003, Japan

3. Glycan & Life Systems Integration Center (GaLSIC), Faculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan

Abstract

Abstract Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development.

Funder

Japan Science and Technology Agency

National Bioscience Database Center

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics

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