Tidying-up the plant nuclear space: domains, functions, and dynamics

Author:

Santos Ana Paula1,Gaudin Valérie2,Mozgová Iva34,Pontvianne Frédéric5,Schubert Daniel6,Tek Ahmet L7,Dvořáčková Martina8,Liu Chang910,Fransz Paul11,Rosa Stefanie12,Farrona Sara13

Affiliation:

1. Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal

2. Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France

3. Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic

4. Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic

5. CNRS, Laboratoire Génome et Développement des Plantes (LGDP), Université de Perpignan Via Domitia, Perpignan, France

6. Institute for Biology, Freie Universität Berlin, Berlin, Germany

7. Agricultural Genetic Engineering Department, Niğde Ömer Halisdemir University, Niğde, Turkey

8. CEITEC/Masaryk University, Brno, Czech Republic

9. Center for Plant Molecular Biology (ZMBP), University of Tübingen, Tübingen, Germany

10. Institute of Biology, University of Hohenheim, Stuttgart, Germany

11. University of Amsterdam, Amsterdam, The Netherlands

12. Swedish University of Agricultural Sciences, Uppsala, Sweden

13. Plant and AgriBiosciences Centre, Ryan Institute, NUI Galway, Galway, Ireland

Abstract

Abstract Understanding how the packaging of chromatin in the nucleus is regulated and organized to guide complex cellular and developmental programmes, as well as responses to environmental cues is a major question in biology. Technological advances have allowed remarkable progress within this field over the last years. However, we still know very little about how the 3D genome organization within the cell nucleus contributes to the regulation of gene expression. The nuclear space is compartmentalized in several domains such as the nucleolus, chromocentres, telomeres, protein bodies, and the nuclear periphery without the presence of a membrane around these domains. The role of these domains and their possible impact on nuclear activities is currently under intense investigation. In this review, we discuss new data from research in plants that clarify functional links between the organization of different nuclear domains and plant genome function with an emphasis on the potential of this organization for gene regulation.

Funder

Swedish Research Council

Portuguese Foundation for Science and Technology

Youth and Sports of the Czech Republic

French Laboratory of Excellence

European Union’s Horizon 2020

Scientific and Technological Research Council of Turkey

Saclay Plant Science

Publisher

Oxford University Press (OUP)

Subject

Plant Science,Physiology

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