Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited

Author:

Chazot Nicolas123,Wahlberg Niklas1,Freitas André Victor Lucci4,Mitter Charles5,Labandeira Conrad5678,Sohn Jae-Cheon9,Sahoo Ranjit Kumar10,Seraphim Noemy11,de Jong Rienk12,Heikkilä Maria13

Affiliation:

1. Department of Biology, Lunds Universitet, Sölvegatan 37, 223 62 Lund, Sweden

2. Gothenburg Global Biodiversity Centre, Box 461, 405 30 Gothenburg, Sweden

3. Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Gothenburg, Sweden

4. Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Cidade Universitária Zeferino Vaz, Caixa Postal 6109, Barão Geraldo 13083-970, Campinas, São Paulo, Brazil

5. Department of Entomology, University of Maryland, 4291 Fieldhouse Dr, College Park, MD 20742, USA

6. Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, 10th St. & Constitution Ave., Washington, DC 20013, USA

7. Department of Entomology and BEES Program, University of Maryland, 4291 Fieldhouse Dr, College Park, MD 20741, USA

8. Key Lab of Insect Evolution and Environmental Change, School of Life Sciences, Capital Normal University, XinJieKouWai St., Beijing 100048, China

9. Department of Science Education, Gongju National University of Education, Gongju, 27, Ungjin-ro, Gongju-si, Chungnam 32553, Republic of Korea

10. IISER-TVM Centre for Research and Education in Ecology and Evolution (ICREEE), School of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Kerala 695 551, India

11. Instituto Federal de Educação, Ciência e Tecnologia de São Paulo, Campus Campinas, CTI Renato Archer - Av. Comendador Aladino Selmi, s/n - Amarais, Campinas, São Paulo 13069-901, Brazil

12. Department of Entomology, Naturalis Biodiversity Center, PO Box 9517, 2300 RA Leiden, The Netherlands

13. Finnish Museum of Natural History LUOMUS, Zoology Unit, University of Helsinki, P.O. Box 17, Helsinki FI-00014, Finland

Abstract

Abstract The need for robust estimates of times of divergence is essential for downstream analyses, yet assessing this robustness is still rare. We generated a time-calibrated genus-level phylogeny of butterflies (Papilionoidea), including 994 taxa, up to 10 gene fragments and an unprecedented set of 12 fossils and 10 host-plant node calibration points. We compared marginal priors and posterior distributions to assess the relative importance of the former on the latter. This approach revealed a strong influence of the set of priors on the root age but for most calibrated nodes posterior distributions shifted from the marginal prior, indicating significant information in the molecular data set. Using a very conservative approach we estimated an origin of butterflies at 107.6 Ma, approximately equivalent to the latest Early Cretaceous, with a credibility interval ranging from 89.5 Ma (mid Late Cretaceous) to 129.5 Ma (mid Early Cretaceous). In addition, we tested the effects of changing fossil calibration priors, tree prior, different sets of calibrations and different sampling fractions but our estimate remained robust to these alternative assumptions. With 994 genera, this tree provides a comprehensive source of secondary calibrations for studies on butterflies.

Funder

Swedish Research Council

Department of Biology, Lund University

National Science Foundation

Smithsonian Institution National Museum of Natural History

National Research Foundation of Korea

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

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