Quantifying the Impact of Dependent Evolution among Sites in Phylogenetic Inference-Reference-Cited by-同舟云学术

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Quantifying the Impact of Dependent Evolution among Sites in Phylogenetic Inference

Published:2010-11-15 Issue:1 Volume:60 Page:60-73
ISSN:1076-836X
Container-title:Systematic Biology
language:en
Short-container-title:

Author:

Nasrallah Chris A.¹,Mathews David H.²,Huelsenbeck John P.¹

Affiliation:

1. Department of Integrative Biology, University of California, Berkeley, 3060 Valley Life Sciences Building #3140, Berkeley, CA 94720-3140, USA

2. Department of Biochemistry and Biophysics, University of Rochester Medical Center, 601 Elmwood Avenue, Box 712, Rochester, NY 14642, USA

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Link

http://academic.oup.com/sysbio/article-pdf/60/1/60/24208042/syq074.pdf

Reference37 articles.

1. Investigating protein-coding sequence evolution with probabilistic substitution models;Anisimova;Mol. Biol. Evol.,2009

2. How to guarantee optimal stability for most representative structures in the protein data bank;Bastolla;Proteins,2001

3. Evidence for an ancient adaptive episode of convergent molecular evolution;Castoe;Proc. Natl. Acad. Sci. U.S.A.,2009

4. Quantifying the impact of protein tertiary structure on molecular evolution;Choi;Mol. Biol. Evol.,2007

5. Cases in which parsimony and compatibility methods will be positively misleading;Felsenstein;Syst. Zool,1978

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4. Ancestral sequence reconstruction for co-evolutionary models;Journal of Statistical Mechanics: Theory and Experiment;2022-01-01

5. Shifts in amino acid preferences as proteins evolve: A synthesis of experimental and theoretical work;Protein Science;2021-08-12

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