Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake

Author:

Schnepf Andrea12,Black Christopher K3,Couvreur Valentin4,Delory Benjamin M5,Doussan Claude6,Heymans Adrien4,Javaux Mathieu17,Khare Deepanshu12,Koch Axelle7,Koch Timo8910,Kuppe Christian W11,Landl Magdalena12,Leitner Daniel12,Lobet Guillaume12,Meunier Félicien1213,Postma Johannes A11,Schäfer Ernst D314,Selzner Tobias12,Vanderborght Jan12,Vereecken Harry12

Affiliation:

1. Forschungszentrum Jülich GmbH, Institute of Bio- and Geosciences – Agrosphere (IBG-3) , 52425 Jülich , Germany

2. International Soil Modelling Consortium ISMC , Jülich , Germany

3. Department of Plant Science, The Pennsylvania State University , 102 Tyson Building, University Park PA 16802 , USA

4. Earth and Life Institute, Agronomy, Université catholique de Louvain , Louvain-la-Neuve , Belgium

5. Institute of Ecology, Leuphana University Lüneburg , Universitätsallee 1, 21335 Lüneburg , Germany

6. INRAE, Avignon Université , EMMAH, F-84000 Avignon , France

7. Earth and Life Institute, Environmental Sciences, Université catholique de Louvain , Louvain-la-Neuve , Belgium

8. Department of Mathematics, University of Oslo , Postboks 1053, Blindern, 0316 Oslo , Norway

9. SCAN department, Simula Research Laboratory , Kristian Augusts gate 23, 0164 Oslo , Norway

10. Department of Hydromechanics and Modelling of Hydrosystems , University of Stuttgart, Pfaffenwaldring 61,70569 Stuttgart , Germany

11. Forschungszentrum Jülich GmbH, Institute of Bio- and Geosciences – Plant Sciences (IBG-2) , 52425 Jülich , Germany

12. CAVElab - Computational and Applied Vegetation Ecology , Ghent University, Ghent, Belgium

13. Department of Earth and Environment , Boston University, Boston , USA

14. School of Mathematical Sciences, University of Nottingham, Mathematical Sciences Building , University Park, Nottingham,NG7 2RD , United Kingdom

Abstract

Abstract Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the selection of optimal root traits. In order to test their accuracy and reliability, we present the first benchmarking of root water uptake from soil using five well-established functional-structural root architecture models: DuMux, CPlantBox, R-SWMS, OpenSimRoot and SRI. The benchmark scenarios include basic tests for water flow in soil and roots as well as advanced tests for the coupled soil-root system. The reference solutions and the solutions of the different simulators are available through Jupyter Notebooks on a GitHub repository. All of the simulators were able to pass the basic tests and continued to perform well in the benchmarks for the coupled soil-plant system. For the advanced tests, we created an overview of the different ways of coupling the soil and the root domains as well as the different methods used to account for rhizosphere resistance to water flow. Although the methods used for coupling and modelling rhizosphere resistance were quite different, all simulators were in reasonably good agreement with the reference solution. During this benchmarking effort, individual simulators were able to learn about their strengths and challenges, while some were even able to improve their code. Some now include the benchmarks as standard tests within their codes. Additional model results may be added to the GitHub repository at any point in the future and will be automatically included in the comparison.

Publisher

Oxford University Press (OUP)

Subject

Plant Science,Agronomy and Crop Science,Biochemistry, Genetics and Molecular Biology (miscellaneous),Modeling and Simulation

Reference59 articles.

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