The Effects of Captivity on the Mammalian Gut Microbiome

Author:

McKenzie Valerie J.1,Song Se Jin12,Delsuc Frédéric3,Prest Tiffany L.1,Oliverio Angela M.1,Korpita Timothy M.1,Alexiev Alexandra1,Amato Katherine R.4,Metcalf Jessica L.5,Kowalewski Martin6,Avenant Nico L.78,Link Andres9,Di Fiore Anthony10,Seguin-Orlando Andaine1112,Feh Claudia13,Orlando Ludovic6,Mendelson Joseph R.1415,Sanders Jon216,Knight Rob216

Affiliation:

1. Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA

2. Department of Pediatrics and Computer Science & Engineering, University of California at San Diego, CA, USA

3. Institut des Sciences de l’Evolution, Université de Montpellier, UMR 5554, CNRS, IRD, EPHE, France

4. Department of Anthropology, Northwestern University, IL, USA

5. Department of Animal Sciences, Colorado State University, CO, USA

6. National Scientific and Technical Research Council (CONICET), Estacion Biologica Corrientes, Argentina

7. Department of Mammalogy, National Museum, Bloemfontein, South Africa

8. Centre for Environmental Management, University of the Free State, Bloemfontein, South Africa

9. Departamento de Ciencias Biologicas, Universidad de Los Andes, Bogotá, Colombia

10. Department of Anthropology, University of Texas Austin, TX, USA

11. Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark

12. National High-Throughput DNA Sequencing Center, University of Copenhagen, Denmark

13. Association pour le cheval de Przewalski: TAKH, Station Biologique de la Tour du Valat, Arles 13200, France

14. Zoo Atlanta, GA, USA

15. School of Biological Sciences, Georgia Institute of Technology, GA, USA

16. Center for Microbiome Innovation, University of California at San Diego, La Jolla, CA, USA

Funder

National Science Foundation

Publisher

Oxford University Press (OUP)

Subject

Plant Science,Animal Science and Zoology

Reference42 articles.

1. Patterns in gut microbiota similarity associated with degree of sociality among sex classes of a neotropical primate;Amato;Microb Ecol,2017

2. Deblur rapidly resolves single-nucleotide community sequence patterns;Amir;mSystems,2017

3. Gut microbiota and extreme longevity;Biagi;Curr Biol,2016

4. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms;Caporaso;ISME J,2012

5. QIIME allows analysis of high-throughput community sequencing data;Caporaso;Nat Methods,2010

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