1. Department of Microbiology, Faculty of Science, Stellenbosch University , Stellenbosch 7600 , South Africa
2. Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch 7600 , South Africa
3. Department of Biochemistry, Genetics and Microbiology, University of Pretoria , Hatfield, Pretoria 0028 , South Africa
4. Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria , Hatfield, Pretoria 0028 , South Africa