Targeted learning with an undersmoothed LASSO propensity score model for large-scale covariate adjustment in health-care database studies

Author:

Wyss Richard1,van der Laan Mark2,Gruber Susan3,Shi Xu4,Lee Hana5,Dutcher Sarah K6,Nelson Jennifer C7,Toh Sengwee8,Russo Massimiliano1,Wang Shirley V1,Desai Rishi J1,Lin Kueiyu Joshua1

Affiliation:

1. Harvard Medical School Division of Pharmacoepidemiology and Pharmacoeconomics, Brigham and Women’s Hospital, , Boston, MA 02120, United States

2. University of California, Berkeley Division of Biostatistics, School of Public Health, , Berkeley, CA 94720, United States

3. Putnam Data Sciences, LLC , Cambridge, MA 02139, United States

4. University of Michigan Department of Biostatistics, School of Public Health, , Ann Arbor, MI 48109, United States

5. US Food and Drug Administration Office of Biostatistics, Center for Drug Evaluation and Research, , Silver Spring, MD 20903, United States

6. US Food and Drug Administration Office of Surveillance and Epidemiology, Center for Drug Evaluation and Research, , Silver Spring, MD 20903, United States

7. Kaiser Permanente Washington Health Research Institute , Seattle, WA 98101, United States

8. Harvard Medical School and Harvard Pilgrim Health Care Institute Department of Population Medicine, , Boston, MA 02215, United States

Abstract

Abstract Least absolute shrinkage and selection operator (LASSO) regression is widely used for large-scale propensity score (PS) estimation in health-care database studies. In these settings, previous work has shown that undersmoothing (overfitting) LASSO PS models can improve confounding control, but it can also cause problems of nonoverlap in covariate distributions. It remains unclear how to select the degree of undersmoothing when fitting large-scale LASSO PS models to improve confounding control while avoiding issues that can result from reduced covariate overlap. Here, we used simulations to evaluate the performance of using collaborative-controlled targeted learning to data-adaptively select the degree of undersmoothing when fitting large-scale PS models within both singly and doubly robust frameworks to reduce bias in causal estimators. Simulations showed that collaborative learning can data-adaptively select the degree of undersmoothing to reduce bias in estimated treatment effects. Results further showed that when fitting undersmoothed LASSO PS models, the use of cross-fitting was important for avoiding nonoverlap in covariate distributions and reducing bias in causal estimates.

Funder

Patient-Centered Outcomes Research Institute

National Institutes of Health

US Food and Drug Administration

Publisher

Oxford University Press (OUP)

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