Pseudomolecule-scale genome assemblies of <i>Drepanocaryum sewerzowii</i> and <i>Marmoritis complanata</i>-Reference-Cited by-同舟云学术

Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata

Published:2024-07-24 Issue: Volume: Page:
ISSN:2160-1836
Container-title:G3: Genes, Genomes, Genetics
language:en
Short-container-title:

Author:

Smit Samuel J¹^ORCID,Whitehead Caragh¹,James Sally R²,Jeffares Daniel C³^ORCID,Godden Grant⁴^ORCID,Peng Deli⁵⁶,Sun Hang⁷^ORCID,Lichman Benjamin R¹

Affiliation:

1. Centre for Novel Agricultural Products, Department of Biology, University of York , York YO10 5DD , UK

2. Bioscience Technology Facility, Department of Biology, University of York , York YO10 5DD , UK

3. York Biomedical Research Institute, Department of Biology, University of York , York YO10 5DD , UK

4. Florida Museum of Natural History, University of Florida , Gainesville, FL 32611 , USA

5. School of Life Science, Yunnan Normal University , Kunming 650092, Yunnan , China

6. Key Laboratory of Yunnan for Biomass Energy and Biotechnology of Environment, Yunnan Normal University , Kunming 650500 , China

7. Key Laboratory for Plant Diversity and Biogeography of East Asia/Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences , Kunming 650201 , China

Abstract

Abstract The Nepetoideae, a subfamily of Lamiaceae (mint family), is rich in aromatic plants, many of which are sought after for their use as flavors and fragrances or for their medicinal properties. Here, we present genome assemblies for two species in Nepetiodeae: Drepanocaruym sewerzowii and Marmoritis complanata. Both assemblies were generated using Oxford Nanopore Q20 + reads with contigs anchored to nine pseudomolecules that resulted in 335 Mb and 305 Mb assemblies, respectively, and BUSCO scores above 95% for both the assembly and annotation. We furthermore provide a species tree for the Lamiaceae using only genome-derived gene models, complementing existing transcriptome and marker-based phylogenies.

Funder

BBSRC

UKRI

Publisher

Oxford University Press (OUP)

Link

https://academic.oup.com/g3journal/advance-article-pdf/doi/10.1093/g3journal/jkae172/58831033/jkae172.pdf

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