Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)

Author:

Steffen Karin1,Proux-Wéra Estelle2,Soler Lucile3,Churcher Allison4,Sundh John2,Cárdenas Paco1

Affiliation:

1. Pharmacognosy, Department of Pharmaceutical Biosciences, Uppsala University , Uppsala 751 24 , Sweden

2. Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University , Solna SE-17121 , Sweden

3. Department of Medical Biochemistry and Microbiology, National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Uppsala University , Uppsala 752 37 , Sweden

4. Department of Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Umeå University , Umeå 901 87 , Sweden

Abstract

Abstract Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes.

Funder

Executive Agency for Small and Medium-sized Enterprises

Knut and Alice Wallenberg Foundation

SciLifeLab

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology

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