WebDISCO: a web service for distributed cox model learning without patient-level data sharing

Author:

Lu Chia-Lun1,Wang Shuang1,Ji Zhanglong1,Wu Yuan2,Xiong Li31,Jiang Xiaoqian11,Ohno-Machado Lucila1

Affiliation:

1. Department of Biomedical Informatics, University of California, San Diego, La Jolla, CA, 92093, USA Email: challen@ucsd.edu , shw070@ucsd.edu , z1ji@ucsd.edu , x1jiang@ucsd.edu , machado@ucsd.edu

2. Department of Biostatistics & Bioinformatics, Duke University, Durham, NC, 27708, USA Email: yuan.wu@duke.edu

3. Department of Mathematics & Computer Science, Emory University, Atlanta, GA 30322, USA.

Abstract

Abstract Objective The Cox proportional hazards model is a widely used method for analyzing survival data. To achieve sufficient statistical power in a survival analysis, it usually requires a large amount of data. Data sharing across institutions could be a potential workaround for providing this added power. Methods and materials The authors develop a web service for distributed Cox model learning (WebDISCO), which focuses on the proof-of-concept and algorithm development for federated survival analysis. The sensitive patient-level data can be processed locally and only the less-sensitive intermediate statistics are exchanged to build a global Cox model. Mathematical derivation shows that the proposed distributed algorithm is identical to the centralized Cox model. Results The authors evaluated the proposed framework at the University of California, San Diego (UCSD), Emory, and Duke. The experimental results show that both distributed and centralized models result in near-identical model coefficients with differences in the range 10−15 to 10−12 . The results confirm the mathematical derivation and show that the implementation of the distributed model can achieve the same results as the centralized implementation. Limitation The proposed method serves as a proof of concept, in which a publicly available dataset was used to evaluate the performance. The authors do not intend to suggest that this method can resolve policy and engineering issues related to the federated use of institutional data, but they should serve as evidence of the technical feasibility of the proposed approach. Conclusions WebDISCO (Web-based Distributed Cox Regression Model; https://webdisco.ucsd-dbmi.org:8443/cox/ ) provides a proof-of-concept web service that implements a distributed algorithm to conduct distributed survival analysis without sharing patient level data.

Publisher

Oxford University Press (OUP)

Subject

Health Informatics

Reference36 articles.

1. Review of survival analyses published in cancer journals;Altman;Br J Cancer.,1995

2. Comparison of the prognostic value of a panel of tissue tumor markers and established clinicopathological factors in patients with gastric cancer;Wiksten;Anticancer Res.,2008

3. Generalisability of survival estimates for patients with breast cancer–a comparison across two population-based series;Lundin;Eur J Cancer.,2006

4. Survival analysis with electronic health record data: Experiments with chronic kidney disease;Hagar;Stat Anal Data Min ASA Data Sci J.,2014

Cited by 101 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3