Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models
Author:
Affiliation:
1. Department of Mathematics and Computer Science, Freie Universität Berlin , Takustr. 9, Berlin 14195 , Germany
2. Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics , Berlin 14195 , Germany
Abstract
Funder
China Scholarship Council
IPCC
Program at Freie Universität Berlin
Publisher
Oxford University Press (OUP)
Subject
Molecular Biology,Information Systems
Link
https://academic.oup.com/bib/article-pdf/24/2/bbad071/49559993/bbad071.pdf
Reference43 articles.
1. Pangenomics enables genotyping of known structural variants in 5202 diverse genomes;Sirén;Science,2021
2. Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats;Jakubosky;Nat Commun,2020
3. Polymer physics predicts the effects of structural variants on chromatin architecture;Bianco;Nat Genet,2018
4. Paternally inherited cis-regulatory structural variants are associated with autism;Brandler;Science,2018
5. Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking;Weischenfeldt;Nat Genet,2017
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