Abstract
Abstract. In the past decade, difficulties encountered in reproducing the results of a cancer study at Duke University resulted in a scandal and an investigation which concluded that tools used for data management, analysis, and modeling were inappropriate for the documentation of the study, let alone the reproduction of the results. New protocols were developed which require that data analysis and modeling be carried out with scripts that can be used to reproduce the results and are a record of all decisions and interpretations made during an analysis or a modeling effort. In the hydrological sciences, we face similar challenges and need to develop similar standards for transparency and repeatability of results. A promising route is to start making use of open-source languages (such as R and Python) to write scripts and to use collaborative coding environments (such as Git) to share our codes for inspection and use by the hydrological community. An important side-benefit to adopting such protocols is consistency and efficiency among collaborators.
Subject
General Earth and Planetary Sciences,General Engineering,General Environmental Science
Reference20 articles.
1. Anderson, M. P., Woessner, W. W., and Hunt, R. J.: Applied Groundwater Modeling, 2nd Edn., Academic Press, San Diego, 2015.
2. Bakker, M.: Semi-analytic modeling of transient multi-layer flow with TTim, Hydrogeol. J., 21, 935–943, 2013.
3. Bakker, M., Post, V., Langevin, C., Hughes, J., White, J., Starn, J., and Fienen, M.: Scripting MODFLOW model development using Python and FloPy, Groundwater, https://doi.org/10.1111/gwat.12413, in press, 2016.
4. Califf, R. M. and Kornbluth, S.: Establishing a Framework for Improving the Quality of Clinical and Translational Research, J. Clin. Oncol., 30, 1725–1726, https://doi.org/10.1200/JCO.2011.41.4458, 2012.
5. Carlson, B.: Putting oncology patients at risk, Biotechnol. Healthcare, 9, 17–21, 2012.
Cited by
18 articles.
订阅此论文施引文献
订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献