Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy

Author:

Chheda Zinal S.1,Kohanbash Gary12ORCID,Okada Kaori1,Jahan Naznin1ORCID,Sidney John3,Pecoraro Matteo4,Yang Xinbo5,Carrera Diego A.1ORCID,Downey Kira M.1,Shrivastav Shruti1ORCID,Liu Shuming1,Lin Yi1ORCID,Lagisetti Chetana6,Chuntova Pavlina1,Watchmaker Payal B.1,Mueller Sabine1,Pollack Ian F.2ORCID,Rajalingam Raja7ORCID,Carcaboso Angel M.8ORCID,Mann Matthias4,Sette Alessandro3,Garcia K. Christopher5910,Hou Yafei1,Okada Hideho11112ORCID

Affiliation:

1. Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA

2. Department of Neurosurgery, University of Pittsburgh School of Medicine, Pittsburgh, PA

3. Center for Infectious Disease, Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA

4. Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

5. Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA

6. Department of Public Health, University of California, Berkeley, Berkeley, CA

7. Department of Surgery, Immunogenetics and Transplantation Laboratory, University of California, San Francisco, San Francisco, CA

8. Institut de Recerca Sant Joan de Deu, Barcelona, Spain

9. Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA

10. Department of Structural Biology, Stanford University School of Medicine, Stanford, CA

11. Cancer Immunotherapy Program, University of California, San Francisco, San Francisco, CA

12. The Parker Institute for Cancer Immunotherapy, San Francisco, CA

Abstract

The median overall survival for children with diffuse intrinsic pontine glioma (DIPG) is less than one year. The majority of diffuse midline gliomas, including more than 70% of DIPGs, harbor an amino acid substitution from lysine (K) to methionine (M) at position 27 of histone 3 variant 3 (H3.3). From a CD8+ T cell clone established by stimulation of HLA-A2+ CD8+ T cells with synthetic peptide encompassing the H3.3K27M mutation, complementary DNA for T cell receptor (TCR) α- and β-chains were cloned into a retroviral vector. TCR-transduced HLA-A2+ T cells efficiently killed HLA-A2+H3.3K27M+ glioma cells in an antigen- and HLA-specific manner. Adoptive transfer of TCR-transduced T cells significantly suppressed the progression of glioma xenografts in mice. Alanine-scanning assays suggested the absence of known human proteins sharing the key amino acid residues required for recognition by the TCR, suggesting that the TCR could be safely used in patients. These data provide us with a strong basis for developing T cell–based therapy targeting this shared neoepitope.

Funder

NIH

National Institute of Neurological Disorders and Stroke

NINDS

National Center for Advancing Translational Sciences

University of California, San Francisco

Clinical & Translational Science Institute

V Foundation for Cancer Research

Parker Institute for Cancer Immunotherapy

National Cancer Institute

Fondo Alicia Pueyo

Instituto de Salud Carlos III

Fondo Europeo de Desarrollo Regional

Publisher

Rockefeller University Press

Subject

Immunology,Immunology and Allergy

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