The interweaved signatures of common-gamma-chain cytokines across immunologic lineages

Author:

Baysoy Alev12ORCID,Seddu Kumba1ORCID,Salloum Tamara3ORCID,Dawson Caleb A.45ORCID,Lee Juliana J.1ORCID,Yang Liang1ORCID,Gal-oz Shani6ORCID,Ner-Gaon Hadas6ORCID,Tellier Julie45ORCID,Millan Alberto7ORCID,Sasse Alexander8ORCID,Brown Brian910ORCID,Lanier Lewis L.7ORCID,Shay Tal6ORCID,Nutt Stephen45ORCID,Dwyer Daniel3ORCID,Benoist Christophe12ORCID,

Affiliation:

1. Department of Immunology, Harvard Medical School 1 , Boston, MA, USA

2. Broad Institute of MIT and Harvard 2 , Cambridge, MA, USA

3. Division of Allergy and Clinical Immunology, Brigham and Women's Hospital; and Department of Medicine, Harvard Medical School 3 , Boston, MA, USA

4. The Walter and Eliza Hall Institute of Medical Research 4 , Parkville, Australia

5. and Department of Medical Biology, University of Melbourne 4 , Parkville, Australia

6. Department of Life Sciences, Ben-Gurion University of the Negev 5 , Beer-Sheva, Israel

7. Department of Microbiology and Immunology, University of California, San Francisco 6 , San Francisco, CA, USA

8. Paul G. Allen School of Computer Science and Engineering, University of Washington 7 , Seattle, WA, USA

9. Precision Immunology Institute, Icahn School of Medicine at Mount Sinai 8 , New York, NY, USA

10. Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai 9 , New York, NY, USA

Abstract

“γc” cytokines are a family whose receptors share a “common-gamma-chain” signaling moiety, and play central roles in differentiation, homeostasis, and communications of all immunocyte lineages. As a resource to better understand their range and specificity of action, we profiled by RNAseq the immediate-early responses to the main γc cytokines across all immunocyte lineages. The results reveal an unprecedented landscape: broader, with extensive overlap between cytokines (one cytokine doing in one cell what another does elsewhere) and essentially no effects unique to any one cytokine. Responses include a major downregulation component and a broad Myc-controlled resetting of biosynthetic and metabolic pathways. Various mechanisms appear involved: fast transcriptional activation, chromatin remodeling, and mRNA destabilization. Other surprises were uncovered: IL2 effects in mast cells, shifts between follicular and marginal zone B cells, paradoxical and cell-specific cross-talk between interferon and γc signatures, or an NKT-like program induced by IL21 in CD8+ T cells.

Funder

National Institute of Allergy and Infectious Diseases

National Institutes of Health

National Health and Medical Research Council

Publisher

Rockefeller University Press

Subject

Immunology,Immunology and Allergy

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