BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU-Reference-Cited by-同舟云学术

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU

Published:2014-06-03 Issue: Volume:2 Page:e421
ISSN:2167-8359
Container-title:PeerJ
language:en
Short-container-title:

Author:

Luo Ruibang¹,Wong Yiu-Lun¹,Law Wai-Chun¹,Lee Lap-Kei¹²,Cheung Jeanno¹,Liu Chi-Man¹,Lam Tak-Wah¹

Affiliation:

1. HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong

2. School of Science and Technology, The Open University of Hong Kong, Hong Kong

Publisher

PeerJ

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

Link

https://peerj.com/articles/421.pdf

Reference20 articles.

1. An integrative variant analysis suite for whole exome next-generation sequencing data;Challis;BMC Bioinformatics,2012

2. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples;Cibulskis;Nature Biotechnology,2013

3. A framework for variation discovery and genotyping using next-generation DNA sequencing data;DePristo;Nature Genetics,2011

4. Haplotype-based variant detection from short-read sequencing;Garrison,2012

5. GPU accelerated signal processing in the ion proton whole genome sequencer. Available at http://on-demand.gputechconf.com/gtc/2013/presentations/S3229-Signal-Processing-Whole-Genome -quencer.pdf (accessed 31 March 2014)

Cited by 16 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. From GPUs to AI and quantum: three waves of acceleration in bioinformatics;Drug Discovery Today;2024-06

2. GenStore: a high-performance in-storage processing system for genome sequence analysis;Proceedings of the 27th ACM International Conference on Architectural Support for Programming Languages and Operating Systems;2022-02-22

3. HKG: an open genetic variant database of 205 Hong Kong cantonese exomes;NAR Genomics and Bioinformatics;2022-01-13

4. From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures;Computational and Structural Biotechnology Journal;2022

5. HKG: An open genetic variant database of 205 Hong Kong Cantonese exomes;2021-06-16