KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models. I. review and model concept

Author:

Deckmyn Gaby1ORCID,Flores Omar12ORCID,Mayer Mathias34ORCID,Domene Xavier56,Schnepf Andrea7,Kuka Katrin8,Van Looy Kris9ORCID,Rasse Daniel P.10ORCID,Briones Maria J.I.11,Barot Sébastien12,Berg Matty1314ORCID,Vanguelova Elena15,Ostonen Ivika16ORCID,Vereecken Harry7ORCID,Suz Laura M.17ORCID,Frey Beat18,Frossard Aline18ORCID,Tiunov Alexei19,Frouz Jan20,Grebenc Tine21ORCID,Öpik Maarja16,Javaux Mathieu722ORCID,Uvarov Alexei19,Vindušková Olga1ORCID,Henning Krogh Paul23ORCID,Franklin Oskar2425,Jiménez Juan26,Curiel Yuste Jorge2728ORCID

Affiliation:

1. Department of Biology, Plants and Ecosystems (PLECO), Universiteit Antwerpen, Antwerpen, Belgium

2. Biogeography and Global Change, National Museum of Natural Sciences-Spanish National Research Council (MNCN-CSIC), Madrid, Spain

3. Institute of Forest Ecology, Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria

4. Biogeochemistry Group, Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland

5. CREAF, Cerdanyola del Vallès, Spain

6. Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain

7. Agrosphere Institute, IBG, Forschungszentrum Jülich GmbH, Jülich, Germany

8. Institute for Crop and Soil Science, Julius Kühn-Institut (JKI), Braunschwei, Germany

9. OVAM, Flemish Institute for Materials and Soils, Mechelen, Belgium

10. Department of Biogeochemistry and Soil Quality, Norwegian Institute of Bioeconomy Research (NIBIO), Aas, Norway

11. Departamento de Ecología y Biología Animal, Universidad de Vigo, Vigo, Spain

12. Institute of Ecology and Environmental Sciences, IRD, UPEC, CNRS, INRA, Sorbonne Université, Paris, France

13. Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, Netherlands

14. Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands

15. Forest Research, Alice Holt Lodge, Farnham, UK

16. Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia

17. Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, London, UK

18. Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland

19. A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia

20. Institute for Environmental Studies, Charles University, Prague, Czech Republic

21. Slovenian Forestry Institute, Ljubljana, Slovenia

22. Earth and Life Institute, UCLouvain, Louvain-la-Neuve, Belgium

23. Department of Bioscience, Aarhus University, Silkeborg, Denmark

24. Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden

25. International Institute for Applied Systems Analysis IIASA, Laxenburg, Austria

26. Department of Biodiversity Conservation and Ecosystem Restoration, ARAID/IPE-CSIC, Jaca, Spain

27. BC3-Basque Centre for Climate Change, Scientific Campus of the University of the Basque Country, Bilbao, Bizkaia, Spain

28. IKERBASQUE, Basque Foundation for Science, Bilbao, Spain

Abstract

The relatively poor simulation of the below-ground processes is a severe drawback for many ecosystem models, especially when predicting responses to climate change and management. For a meaningful estimation of ecosystem production and the cycling of water, energy, nutrients and carbon, the integration of soil processes and the exchanges at the surface is crucial. It is increasingly recognized that soil biota play an important role in soil organic carbon and nutrient cycling, shaping soil structure and hydrological properties through their activity, and in water and nutrient uptake by plants through mycorrhizal processes. In this article, we review the main soil biological actors (microbiota, fauna and roots) and their effects on soil functioning. We review to what extent they have been included in soil models and propose which of them could be included in ecosystem models. We show that the model representation of the soil food web, the impact of soil ecosystem engineers on soil structure and the related effects on hydrology and soil organic matter (SOM) stabilization are key issues in improving ecosystem-scale soil representation in models. Finally, we describe a new core model concept (KEYLINK) that integrates insights from SOM models, structural models and food web models to simulate the living soil at an ecosystem scale.

Funder

COST Actions BIOLINK

KEYSOM

Belgian Science Policy MASC

ECORISK

Slovenian Research Agency

Basque Government

Spanish Ministry of Science, Innovation and Universities

Knut and Alice Wallenberg Foundation

Publisher

PeerJ

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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