Population structure in Quercus suber L. revealed by nuclear microsatellite markers

Author:

Sousa Filipe1,Costa Joana12,Ribeiro Carla1,Varandas Marta3,Pina-Martins Francisco14,Simões Fernanda3,Matos José3,Glushkova Maria5,Miguel Célia67,Veloso Maria Manuela3,Oliveira Margarida8,Pinto Ricardo Cândido8,Batista Dora19,Paulo Octávio S.1

Affiliation:

1. Faculdade de Ciências, Universidade de Lisboa, cE3c—Centre for Ecology, Evolution and Environmental Changes, Lisboa, Portugal

2. RAIZ, Herdade de Espirra, Pegões, Portugal

3. Instituto Nacional de Investigação Agrária e Veterinária, I.P. (INIAV), Unidade de Investigação de Biotecnologia e Recursos Genéticos, Oeiras, Portugal

4. Polytechnic Institute of Setúbal, ESTBarreiro, Setúbal, Portugal

5. Forest Research Institute of B.A.S., Department of Forest Genetics, Physiology and Plantations, Sofia, Bulgaria

6. Faculdade de Ciências, Universidade de Lisboa, Biosystems & Integrative Sciences Institute, Lisboa, Portugal

7. iBET, Oeiras, Portugal

8. Universidade Nova de Lisboa (ITQB-NOVA), Instituto de Tecnologia Química e Biológica António Xavier, Oeiras, Portugal

9. Instituto Superior de Agronomia, Universidade de Lisboa, LEAF—Linking Landscape, Environment, Agriculture and Food (LEAF), Lisboa, Portugal

Abstract

Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.

Funder

EU ERDF funds

Portugal 2020 Partnership Agreement and Programa Operacional Regional Algarve

National funds through Fundação para a Ciência e Tecnologia (FCT) Portugal

GREEN-IT, Bioresources for Sustainability

cE3c

Publisher

PeerJ

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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