A Geometric Interpretation for Local Alignment-Free Sequence Comparison-Reference-Cited by-同舟云学术

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A Geometric Interpretation for Local Alignment-Free Sequence Comparison

Published:2013-07 Issue:7 Volume:20 Page:471-485
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Behnam Ehsan¹,Waterman Michael S.¹,Smith Andrew D.¹

Affiliation:

1. Molecular and Computational Biology, University of Southern California, Los Angeles, California.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2012.0280

Reference46 articles.

1. Euclidean minimum spanning trees and bichromatic closest pairs

2. Basic local alignment search tool

3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Cited by 7 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Optimal choice of word length when comparing two Markov sequences using a χ 2-statistic;BMC Genomics;2017-10

2. Similarity Projection: A Geometric Measure for Comparison of Biological Sequences;2017 IEEE 13th International Conference on e-Science (e-Science);2017-10

3. A Multiresolution Graphical Representation for Similarity Relationship and Multiresolution Clustering for Biological Sequences;Journal of Computational Biology;2017-04

4. An estimator for local analysis of genome based on the minimal absent word;Journal of Theoretical Biology;2016-04

5. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics;Bioinformatics;2015-06-30

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