Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads-Reference-Cited by-同舟云学术

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Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads

Published:2013-02 Issue:2 Volume:20 Page:64-79
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Song Kai¹,Ren Jie¹,Zhai Zhiyuan²,Liu Xuemei³,Deng Minghua¹,Sun Fengzhu⁴⁵

Affiliation:

1. School of Mathematics, Peking University, Beijing, PR China.

2. School of Mathematics, Shandong University, Jinan, Shandong, PR China.

3. School of Physics, South China University of Technology, Guangzhou, PR China.

4. Molecular and Computational Biology, University of Southern California, Los Angeles, California.

5. TNLIST/Department of Automation, Tsinghua University, Beijing, PR China.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2012.0228

Reference18 articles.

1. A measure of the similarity of sets of sequences not requiring sequence alignment

2. The ‘Expansion-Contraction’ model of Pleistocene biogeography: rocky shores suffer a sea change?

3. Alignment-free detection of local similarity among viral and bacterial genomes

4. Biases in Illumina transcriptome sequencing caused by random hexamer priming

5. Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

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1. Virus-Host Interactions Predictor (VHIP): machine learning approach to resolve microbial virus-host interaction networks;2023-11-05

2. Ksak: A high-throughput tool for alignment-free phylogenetics;Frontiers in Microbiology;2023-03-30

3. Exact sequence matches in genomic studies;Izvestiya VUZ. Applied Nonlinear Dynamics;2023

4. Identification of Non-Coding RNAs Based on Alignment-Free Features in Crassostrea gigas (Pacific Oyster) Transcriptome;Journal of Ocean University of China;2022-11-08

5. AC-PCoA: Adjustment for confounding factors using principal coordinate analysis;PLOS Computational Biology;2022-07-13

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