Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis
Author:
Affiliation:
1. INRA, UR1077 Unité Mathématique Informatique et Génome, Jouy-en-Josas, France.
2. INRA, Unité de Recherche Génomique Info, Versailles, France.
Publisher
Mary Ann Liebert Inc
Subject
Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation
Link
http://www.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022
Reference18 articles.
1. PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
2. SHRiMP2: Sensitive yet Practical Short Read Mapping
3. Opportunistic data structures with applications
4. BFAST: An Alignment Tool for Large Scale Genome Resequencing
5. SeqMap: mapping massive amount of oligonucleotides to the genome
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