HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences-Reference-Cited by-同舟云学术

HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences

Published:2017-11 Issue:11 Volume:33 Page:1083-1098
ISSN:0889-2229
Container-title:AIDS Research and Human Retroviruses
language:en
Short-container-title:AIDS Research and Human Retroviruses

Author:

Ratmann Oliver¹,Wymant Chris²,Colijn Caroline³,Danaviah Siva⁴,Essex Max⁵⁶,Frost Simon⁷,Gall Astrid⁷,Gaseitsiwe Simani⁶,Grabowski Mary K.⁸⁹,Gray Ronald⁸⁹,Guindon Stephane¹⁰¹¹,von Haeseler Arndt¹²¹³,Kaleebu Pontiano¹⁴,Kendall Michelle³,Kozlov Alexey¹⁵,Manasa Justen⁴,Minh Bui Quang¹²,Moyo Sikhulile⁶,Novitsky Vlad⁵⁶,Nsubuga Rebecca¹⁴,Pillay Sureshnee⁴,Quinn Thomas C.⁹¹⁶¹⁷,Serwadda David⁹¹⁸,Ssemwanga Deogratius¹⁴,Stamatakis Alexandros¹⁵¹⁹,Trifinopoulos Jana¹²,Wawer Maria⁸⁹,Brown Andy Leigh²⁰,de Oliveira Tulio²¹,Kellam Paul²²,Pillay Deenan⁴²³,Fraser Christophe²,on behalf of the PANGEA-HIV Consort

Affiliation:

1. MRC Centre for Outbreak Analyses and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

2. Oxford Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.

3. Department of Mathematics, Imperial College London, London, United Kingdom.

4. Africa Health Research Institute, KwaZulu-Natal, South Africa.

5. Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts.

6. Botswana Harvard AIDS Institute Partnership, Gaborone, Botswana.

7. Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

8. Department of Epidemiology Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.

9. Rakai Health Sciences Program, Entebbe, Uganda.

10. Department of Statistics, University of Auckland, Auckland, New Zealand.

11. Laboratoire d'Informatique, de Robotique et de Microelectronique de Montpellier–UMR 5506, CNRS & UM, Montpellier, France.

12. Centre for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna, Austria.

13. Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria.

14. MRC/UVRI Uganda Research Unit on AIDS, Entebbe, Uganda.

15. Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.

16. Division of Intramural Research, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland.

17. Department of Medicine Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.

18. Makerere University School of Public Health, Makerere University College of Health Sciences, Kampala, Uganda.

19. Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany.

20. School of Biological Sciences, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.

21. Nelson R. Mandela School of Medicine, School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.

22. Department of Infectious Diseases and Immunity, Imperial College London, United Kingdom.

23. Division of Infection & Immunity, Faculty of Medical Sciences, University College London, London, United Kingdom.

Publisher

Mary Ann Liebert Inc

Subject

Infectious Diseases,Virology,Immunology

Link

http://www.liebertpub.com/doi/pdf/10.1089/aid.2017.0061

Reference70 articles.

1. High Rates of Forward Transmission Events after Acute/Early HIV‐1 Infection

2. HIV Risk Among Young African American Men Who Have Sex With Men: A Case–Control Study in Mississippi

3. HIV-1 Transmission during Early Infection in Men Who Have Sex with Men: A Phylodynamic Analysis