Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks-Reference-Cited by-同舟云学术

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Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks

Published:2011-11 Issue:11 Volume:18 Page:1561-1574
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Erten Sinan¹,Bebek Gurkan²³,Koyutürk Mehmet¹²

Affiliation:

1. Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, Ohio.

2. Center of Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, Ohio.

3. Genomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2011.0154

Reference58 articles.

1. SUSPECTS: enabling fast and effective prioritization of positional candidates

2. Gene prioritization through genomic data fusion

3. NetGrep: fast network schema searches in interactomes

4. NCBI GEO: archive for high-throughput functional genomic data

5. PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling

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2. End-to-end interpretable disease–gene association prediction;Briefings in Bioinformatics;2023-03-28

3. Diffusion Alignment Coefficient (DAC): A Novel Similarity Metric for Protein-Protein Interaction Network;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2023-03-01

4. HetIG-PreDiG: A Heterogeneous Integrated Graph Model for Predicting Human Disease Genes based on gene expression;PLOS ONE;2023-02-15

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