Finding Maximal Exact Matches Using the r-Index-Reference-Cited by-同舟云学术

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Finding Maximal Exact Matches Using the r-Index

Published:2022-02-01 Issue:2 Volume:29 Page:188-194
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Rossi Massimiliano¹^ORCID,Oliva Marco¹^ORCID,Bonizzoni Paola²^ORCID,Langmead Ben³^ORCID,Gagie Travis⁴^ORCID,Boucher Christina¹^ORCID

Affiliation:

1. Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, USA.

2. Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milano, Italy.

3. Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA.

4. Faculty of Computer Science, Dalhousie University, Halifax, Canada.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2021.0445

Reference21 articles.

1. Improving PacBio Long Read Accuracy by Short Read Alignment

2. Refining the r-index

3. Indexing compressed text

Cited by 4 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Suffix sorting via matching statistics;Algorithms for Molecular Biology;2024-03-12

2. Finding maximal exact matches in graphs;Algorithms for Molecular Biology;2024-03-11

3. Computing All-vs-All MEMs in Grammar-Compressed Text;String Processing and Information Retrieval;2023

4. Computing All-vs-All MEMs in Run-Length-Encoded Collections of HiFi Reads;String Processing and Information Retrieval;2022

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