virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2-Reference-Cited by-同舟云学术

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virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2

Published:2023-01-01 Issue:1 Volume:30 Page:3-20
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Zaman Sumaira¹,Sledzieski Samuel²,Berger Bonnie²³,Wu Yi-Chieh⁴,Bansal Mukul S.¹⁵^ORCID

Affiliation:

1. Department of Computer Science and Engineering, University of Connecticut, Storrs, Connecticut, USA.

2. Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

3. Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

4. Department of Computer Science, Harvey Mudd College, Claremont, California, USA.

5. The Institute for Systems Genomics, University of Connecticut, Storrs, Connecticut, USA.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2021.0507

Reference52 articles.

1. The proximal origin of SARS-CoV-2

2. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

3. Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss

4. RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss

5. Improved gene tree error correction in the presence of horizontal gene transfer

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Comment on Shah et al. Genetic Characteristics and Phylogeographic Dynamics of Lagoviruses, 1988–2021. Viruses 2023, 15, 815;Viruses;2024-06-07

2. Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution;The ISME Journal;2024-01

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