SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data-Reference-Cited by-同舟云学术

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SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data

Published:2021-08-01 Issue:8 Volume:28 Page:774-788
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Gu Wenyan¹^ORCID,Zhou Aizhong¹,Wang Lusheng²,Sun Shiwei³,Cui Xuefeng¹,Zhu Daming¹

Affiliation:

1. School of Computer Science and Technology, Shandong University, Qindao, China.

2. Department of Computer Science, City University of Hong Kong, Hong Kong, China.

3. Key Laboratory of Intelligent Information Processing, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2021.0048

Reference34 articles.

1. SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes

2. RSVSim: an R/Bioconductor package for the simulation of structural variations

3. Mechanisms underlying structural variant formation in genomic disorders

4. Assessing structural variation in a personal genome—towards a human reference diploid genome

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1. Nanopore sequencing with T2T‐CHM13 for accurate detection and preventing the transmission of structural rearrangements in highly repetitive heterochromatin regions in human embryos;Clinical and Translational Medicine;2024-03

2. Sequence Alignment/Map format: a comprehensive review of approaches and applications;Briefings in Bioinformatics;2023-09

3. Nanopore Sequencing with T2T-CHM13 for Accurate Detection and Blocking of Structural Rearrangements in Highly Repetitive Heterochromatin Regions in Human Embryos;2023-07-19

4. Genome-Wide Characterization Reveals Variation Potentially Involved in Pathogenicity and Mycotoxins Biosynthesis of Fusarium proliferatum Causing Spikelet Rot Disease in Rice;Toxins;2022-08-19

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