A Relational Extension of the Notion of Motifs: Application to the Common 3D Protein Substructures Searching Problem-Reference-Cited by-同舟云学术

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A Relational Extension of the Notion of Motifs: Application to the Common 3D Protein Substructures Searching Problem

Published:2009-12 Issue:12 Volume:16 Page:1635-1660
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Pisanti Nadia¹²,Soldano Henry²³,Carpentier Mathilde⁴,Pothier Joel³

Affiliation:

1. Dipartimento di Informatica, Università di Pisa, Largo B. Pontecorvo, Pisa, Italy.

2. LIPN–UMR 7030 CNRS, Université Paris 13, Villetaneuse, France.

3. Université Pierre et Marie Curie-Paris6, Atelier de BioInformatique, Paris, France.

4. Université Pierre et Marie Curie-Paris6, Equipe de Génomique Analytique, INSERM511 Paris, France.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2008.0019

Reference47 articles.

1. A new method to predict the consensus secondary structure of a set of unaligned RNA sequences

2. Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins

3. The ASTRAL compendium for protein structure and sequence analysis

4. Algorithms for the identification of three-dimensional maximal common substructures

5. A protein structure comparison methodology

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