Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models-Reference-Cited by-同舟云学术

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Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models

Published:2020-03-01 Issue:3 Volume:27 Page:361-375
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Larson Gary¹,Thorne Jeffrey L.²³,Schmidler Scott¹⁴

Affiliation:

1. Department of Statistical Science, Duke University, Durham, North Carolina.

2. Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina.

3. Department of Statistics, North Carolina State University, Raleigh, North Carolina.

4. Department of Computer Science, Duke University, Durham, North Carolina.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2019.0500

Reference9 articles.

1. Trends in substitution models of molecular evolution

2. A Stochastic Evolutionary Model for Protein Structure Alignment and Phylogeny

3. Simultaneous Bayesian Estimation of Alignment and Phylogeny under a Joint Model of Protein Sequence and Structure

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1. Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications;Molecular Biology and Evolution;2024-08-22

2. A machine-learning-based alternative to phylogenetic bootstrap;Bioinformatics;2024-06-28

3. Persistent homology reveals strong phylogenetic signal in 3D protein structures;PNAS Nexus;2024-03-28

4. Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation;Bioinformatics;2024-02-19

5. Consequences of Genetic Recombination on Protein Folding Stability;Journal of Molecular Evolution;2022-12-03

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