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Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters

  • Published:2017-06 Issue:6 Volume:24 Page:547-557
  • ISSN:1557-8666
  • Container-title:Journal of Computational Biology
  • language:en
  • Short-container-title:Journal of Computational Biology

Author:

Pellow David1,Filippova Darya2,Kingsford Carl3

Affiliation:

1. The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel.

2. Roche Sequencing Solutions, Pleasanton, California.

3. Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

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1. Securing Fieldable Bioinformatics;2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM);2023-12-05

2. Creating and Using Minimizer Sketches in Computational Genomics;Journal of Computational Biology;2023-12-01

3. GEM: Ultra-Efficient Near-Memory Reconfigurable Acceleration for Read Mapping by Dividing and Predictive Scattering;IEEE Transactions on Parallel and Distributed Systems;2023-12

4. Low consumption automatic discovery protocol for DDS-based large-scale distributed parallel computing;Parallel Computing;2023-11

5. Representing bacteria with unique genomic signatures;Frontiers in Big Data;2022-11-16
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