WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads-Reference-Cited by-同舟云学术

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WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

Published:2015-06 Issue:6 Volume:22 Page:498-509
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Patterson Murray¹,Marschall Tobias²³,Pisanti Nadia⁴⁵,van Iersel Leo⁶,Stougie Leen⁶⁷⁵,Klau Gunnar W.⁶⁷⁵,Schönhuth Alexander⁶

Affiliation:

1. Laboratoire de Biométrie et Biologie Évolutive (LBBE : UMR CNRS 5558), Université de Lyon 1, Villeurbanne, France.

2. Center for Bioinformatics, Saarland University, Saarbrücken, Germany.

3. Max Planck Institute for Informatics, Saarbrücken, Germany.

4. Department of Computer Science, University of Pisa, Italy.

5. Erable Team, INRIA.

6. Life Sciences, Centrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands.

7. VU University, Amsterdam, The Netherlands.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2014.0157

Reference35 articles.

1. HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data

2. Haplotype assembly in polyploid genomes and identical by descent shared tracts

3. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem

4. An MCMC algorithm for haplotype assembly from whole-genome sequence data

5. The Genome of the Netherlands: design, and project goals

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