Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length-Reference-Cited by-同舟云学术

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Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length

Published:2021-04-01 Issue:4 Volume:28 Page:395-409
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Zheng Hongyu¹,Kingsford Carl¹,Marçais Guillaume¹

Affiliation:

1. Computational Biology Department, Carnegie Mellon University, Pittsburgh Pennsylvania, USA.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2020.0432

Reference14 articles.

1. UNAVOIDABLE SETS OF CONSTANT LENGTH

2. Compacting de Bruijn graphs from sequencing data quickly and in low memory

3. Practical Universal k-mer Sets for Minimizer Schemes

4. KMC 2: fast and resource-frugal k-mer counting

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Creating and Using Minimizer Sketches in Computational Genomics;Journal of Computational Biology;2023-12-01

2. Bidirectional String Anchors for Improved Text Indexing and Top-$K$ Similarity Search;IEEE Transactions on Knowledge and Data Engineering;2023-11-01

3. Improving the efficiency of de Bruijn graph construction using compact universal hitting sets;Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics;2021-08

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