Representation of k-Mer Sets Using Spectrum-Preserving String Sets-Reference-Cited by-同舟云学术

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Representation of k-Mer Sets Using Spectrum-Preserving String Sets

Published:2021-04-01 Issue:4 Volume:28 Page:381-394
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Rahman Amatur¹,Medevedev Paul¹²³

Affiliation:

1. Department of Computer Science and Engineering, Penn State, University Park, State College, PA, USA.

2. Department of Biochemistry and Molecular Biology, Penn State, University Park, State College, PA, USA.

3. Center for Computational Biology and Bioinformatics, Penn State, University Park, State College, PA, USA.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2020.0431

Reference37 articles.

1. A space and time-efficient index for the compacted colored de Bruijn graph

2. Belazzougui, D., Gagie, T., Veli, M., et al. 2016b. Fully dynamic de Bruijn graphs. Presented at the International Symposium on String Processing and Information Retrieval. Springer.

3. Boucher, C., Bowe, A., Gagie, T., et al. 2015. Variable-order de Bruijn graphs. Presented at the 2015 Data Compression Conference. IEEE.

Cited by 22 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Compression algorithm for colored de Bruijn graphs;Algorithms for Molecular Biology;2024-05-26

2. Space-efficient computation of k-mer dictionaries for large values of k;Algorithms for Molecular Biology;2024-04-05

3. The role of classifiers and data complexity in learned Bloom filters: insights and recommendations;Journal of Big Data;2024-03-27

4. Function-Assigned Masked Superstrings as a Versatile and Compact Data Type fork-Mer Sets;2024-03-11

5. Finimizers: Variable-length bounded-frequency minimizers fork-mer sets;2024-02-21

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