Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products-Reference-Cited by-同舟云学术

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Published:2013-10 Issue:10 Volume:20 Page:714-737
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Nurk Sergey¹,Bankevich Anton¹,Antipov Dmitry¹,Gurevich Alexey A.¹,Korobeynikov Anton¹²,Lapidus Alla¹³,Prjibelski Andrey D.¹,Pyshkin Alexey¹,Sirotkin Alexander¹,Sirotkin Yakov¹,Stepanauskas Ramunas⁴,Clingenpeel Scott R.⁵,Woyke Tanja⁵,Mclean Jeffrey S.⁶,Lasken Roger⁶,Tesler Glenn⁷,Alekseyev Max A.⁸,Pevzner Pavel A.¹⁹

Affiliation:

1. Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg, Russia.

2. Department of Mathematics and Mechanics, St. Petersburg State University, St. Petersburg, Russia.

3. Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg State University, St. Petersburg, Russia.

4. Bigelow Laboratory for Ocean Sciences, East Boothbay, Maine.

5. DOE Joint Genome Institute, Walnut Creek, California.

6. J. Craig Venter Institute, La Jolla, California.

7. Department of Mathematics, University of California, San Diego, La Jolla, California.

8. Department of Computer Science and Engineering, University of South Carolina, Columbia, South Carolina.

9. Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2013.0084

Reference37 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

2. The Complete Genome Sequence of Escherichia coli K-12

3. Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

4. Telescoper: de novo assembly of highly repetitive regions

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