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Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion

  • Published:2003-06 Issue:3-4 Volume:10 Page:257-281
  • ISSN:1066-5277
  • Container-title:Journal of Computational Biology
  • language:en
  • Short-container-title:Journal of Computational Biology

Author:

Apaydin Mehmet Serkan1,Brutlag Douglas L.2,Guestrin Carlos3,Hsu David4,Latombe Jean-Claude3,Varma Chris5

Affiliation:

1. Department of Electrical Engineering, Stanford University, Stanford, CA 94305

2. Department of Biochemistry, Stanford University, Stanford, CA 94305

3. Department of Computer Science, Stanford University, Stanford, CA 94305

4. Department of Computer Science, National University of Singapore, Singapore

5. Department of EECS, MIT and Department of HST, Harvard Medical School, Cambridge, MA 02138

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

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1. Nearly reducible finite Markov chains: Theory and algorithms;The Journal of Chemical Physics;2021-10-14

2. Efficient and exact sampling of transition path ensembles on Markovian networks;The Journal of Chemical Physics;2020-07-14

3. ART–RRT: As-Rigid-As-Possible search for protein conformational transition paths;Journal of Computer-Aided Molecular Design;2019-08

4. The Role of the Active Site Flap in Streptavidin/Biotin Complex Formation;Journal of the American Chemical Society;2018-04-02

5. Path Boxplots: A Method for Characterizing Uncertainty in Path Ensembles on a Graph;Journal of Computational and Graphical Statistics;2017-04-03
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