Fast and Simple Character Classes and Bounded Gaps Pattern Matching, with Applications to Protein Searching-Reference-Cited by-同舟云学术

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Fast and Simple Character Classes and Bounded Gaps Pattern Matching, with Applications to Protein Searching

Published:2003-12 Issue:6 Volume:10 Page:903-923
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Navarro Gonzalo¹,Raffinot Mathieu²

Affiliation:

1. Department of Computer Science, University of Chile, Blanco Encalada 2120, Santiago, Chile

2. CNRS-Laboratoire Génome et Informatique, Tour Evry 2, 523, Place des Terrasses de l'Agora, 91034 Evry, France

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/106652703322756140

Reference24 articles.

1. A new approach to text searching

2. Faster Approximate String Matching

3. From regular expressions to deterministic automata

4. A fast string searching algorithm

5. Regular expressions into finite automata

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1. Gapped Indexing for Consecutive Occurrences;Algorithmica;2022-10-20

2. From regular expression matching to parsing;Acta Informatica;2022-03-30

3. Top-k Self-Adaptive Contrast Sequential Pattern Mining;IEEE Transactions on Cybernetics;2021

4. Online recognition of dictionary with one gap;Information and Computation;2020-12

5. NetDAP: (δ, γ) −approximate pattern matching with length constraints;Applied Intelligence;2020-07-10

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