Aligning Protein Sequences with Predicted Secondary Structure-Reference-Cited by-同舟云学术

Aligning Protein Sequences with Predicted Secondary Structure

Published:2010-03 Issue:3 Volume:17 Page:561-580
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Kececioglu John¹,Kim Eagu²,Wheeler Travis³

Affiliation:

1. Department of Computer Science, University of Arizona, Tucson, Arizona 85721.

2. Work done while at Department of Computer Science, University of Arizona. Present affiliation: Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin 53706.

3. Work done while at Department of Computer Science, University of Arizona. Present affiliation: Janelia Farm Research Campus, Ashburn, Virginia 20147.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2009.0222

Reference31 articles.

1. Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

2. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

3. PALI--a database of Phylogeny and ALIgnment of homologous protein structures

4. ProbCons: Probabilistic consistency-based multiple sequence alignment

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