Probing RNA Native Conformational Ensembles with Structural Constraints-Reference-Cited by-同舟云学术

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Probing RNA Native Conformational Ensembles with Structural Constraints

Published:2016-05 Issue:5 Volume:23 Page:362-371
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Fonseca Rasmus¹²³,van den Bedem Henry⁴,Bernauer Julie¹²

Affiliation:

1. INRIA Saclay-Île de France, Bâtiment Alan Turing, Campus de l'École Polytechnique, Palaiseau, France.

2. Laboratoire d'Informatique de l'École Polytechnique (LIX), CNRS UMR 7161, École Polytechnique, Palaiseau, France.

3. Department of Computer Science, University of Copenhagen, Nørre Campus, Copenhagen, Denmark.

4. Biosciences Division, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2015.0201

Reference46 articles.

1. Motion planning algorithms for molecular simulations: A survey

2. Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods

3. Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

4. Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation

5. Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations

Cited by 4 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces;Journal of Computational Chemistry;2018-01-05

2. Rigidity theory for biomolecules: concepts, software, and applications;Wiley Interdisciplinary Reviews: Computational Molecular Science;2017-04-27

3. Exploring RNA conformational space under sparse distance restraints;Scientific Reports;2017-03-10

4. Ultraslow Domain Motions in HIV-1 TAR RNA Revealed by Solid-State Deuterium NMR;The Journal of Physical Chemistry B;2016-12-21

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